PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa006710
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB_related
Protein Properties Length: 250aa    MW: 28063.7 Da    PI: 7.889
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58678996PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.3e-09193247146
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                      r+rW++eE++ l+++v+++         Wk++ +       + Rt+ ++k++w++
        Lsa006710 193 RKRWSEEEEDMLKEGVQKFSATanknfPWKKVLEFGRhvfhTSRTPSDLKDKWRN 247
                      89*******************************9988****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579037.97E-82383IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.9E-82383IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002491.5E-52772IPR001965Zinc finger, PHD-type
PROSITE patternPS0135902871IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500907.608192249IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.2E-10192248IPR009057Homeodomain-like
SuperFamilySSF466898.97E-10192248IPR009057Homeodomain-like
PfamPF002499.2E-7193247IPR001005SANT/Myb domain
CDDcd116602.55E-13194250No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MASSACVRXV VDEIKGVFMM DFTEKELCVL CERGGKLLVC NDNGCPISVH EDCMGCSPRF  60
NETGNFCCPY CVYRRLTTET CQLRDKAMLA KKALSSFLGE NVAQNQSKSF SSPCESKHET  120
SVSEETDRIP NRNGEFSGVC DGSTCRIMVV YDGDACKEQG MNAKRVPVED EAGSSEKKTT  180
AFNGKPPLLK GKRKRWSEEE EDMLKEGVQK FSATANKNFP WKKVLEFGRH VFHTSRTPSD  240
LKDKWRNISK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A118K6F64e-45A0A118K6F6_CYNCS; Uncharacterized protein